Basic Information
Locus ID:
evm.TU.LG23.882
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 29740510 | 29741097 | + | evm.TU.LG23.882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 21,716.78 Da | 69.84 | 84.61 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 125 | 168 | 4.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 173 | 5.3E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 173 | 1.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 167 | 3.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 168 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021755877.1 | RING-H2 finger protein ATL56-like [Chenopodium quinoa] | 0 |
| Q9ZV51 | RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DKA9 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology