Basic Information
Locus ID:
evm.TU.LG23.879
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 29680528 | 29685162 | - | evm.TU.LG23.879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.76 | 52,047.98 Da | 44.54 | 87.50 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 321 | 370 | 0.00394546 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 209 | 1.4E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 221 | 277 | 9.8E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 4.5E-7 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 380 | 2.87E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 4.06E-51 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 387 | 2.6E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 151 | 287 | 2.7E-26 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 150 | 4.5E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 1.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 1.7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 2.7E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 7.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.021 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 287 | 1800.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.35067 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 13.27704 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.33032 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.693567 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 11.585487 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 209 | 12.381428 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.248772 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.45016 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.778029 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.35717 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.79626 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 196 | 210 | 7.9E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 118 | 133 | 7.9E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021755342.1 | E3 ubiquitin-protein ligase XBAT32-like [Chenopodium quinoa] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9AY40 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology