Basic Information
Locus ID:
evm.TU.LG23.712
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 27012036 | 27021041 | - | evm.TU.LG23.712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 46,768.17 Da | 46.86 | 70.16 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 141 | 215 | 2.21153E-50 | - |
| CDD | cd12352 | RRM1_TIA1_like | 57 | 127 | 3.73328E-37 | - |
| CDD | cd12354 | RRM3_TIA1_like | 261 | 335 | 4.09793E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | 6.0E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | 8.5E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 329 | 4.7E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 44 | 133 | 5.91E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 340 | 3.39E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 220 | 3.36E-28 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 137 | 2.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 138 | 219 | 6.6E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 238 | 340 | 2.6E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 141 | 214 | 4.8E-25 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 141 | 214 | 0.0023 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 56 | 125 | 2.2E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 262 | 331 | 22.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 262 | 331 | 3.4E-18 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | 15.084535 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | 17.711065 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 335 | 15.425642 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 252 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_034699792.1 | oligouridylate-binding protein 1-like isoform X2 [Vitis riparia] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A360 | Oligouridylate-binding protein 1-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology