Basic Information
Locus ID:
evm.TU.LG23.566
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 24113513 | 24128944 | - | evm.TU.LG23.566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 119,997.26 Da | 47.02 | 76.52 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 919 | 1023 | 1.19359E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 309 | 663 | 1.103E-80 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 917 | 1014 | 3.9E-16 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 779 | 815 | 1.9E-7 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 329 | 740 | 4.2E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 671 | 1070 | 6.75E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 294 | 663 | 2.57E-45 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 775 | 822 | 2.98E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 554 | 664 | 1.5E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 282 | 371 | 4.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 762 | 830 | 2.1E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 428 | 521 | 1.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 678 | 1071 | 2.8E-62 | IPR027417 |
| SMART | SM00490 | helicmild6 | 931 | 1014 | 2.5E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 305 | 640 | 5.5E-29 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 394 | 625 | 11.395607 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 894 | 1067 | 14.099077 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 779 | 818 | 11.338544 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 794 | 803 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 912 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 131 | - | - |
| Coils | Coil | Coil | 354 | 374 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_019107268.1 | helicase-like transcription factor CHR28 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology