Basic Information
Locus ID:
evm.TU.LG23.41
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 3998129 | 4018301 | - | evm.TU.LG23.41 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 44,968.92 Da | 48.84 | 70.42 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 360 | 385 | 1.5E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 325 | 353 | 2.9E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 286 | 314 | 4.7E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 355 | 387 | 2.51E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 282 | 315 | 3.45E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 318 | 354 | 5.65E-8 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 356 | 388 | 6.4E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 278 | 317 | 3.6E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 318 | 355 | 3.0E-13 | - |
| SMART | SM00547 | zf_4 | 288 | 312 | 2.3E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 327 | 351 | 1.2E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 360 | 384 | 7.9E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 325 | 354 | 10.556718 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 358 | 387 | 9.574297 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 286 | 315 | 10.285706 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 362 | 381 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 329 | 348 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 290 | 309 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021736340.1 | zinc finger protein VAR3, chloroplastic-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C9CUY1 | Zinc finger protein VAR3, chloroplastic OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology