Basic Information
Locus ID:
evm.TU.LG23.1068
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 32619168 | 32620460 | - | evm.TU.LG23.1068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 33,754.68 Da | 64.76 | 72.05 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 35 | 78 | 1.39582E-19 | - |
| Pfam | PF13639 | Ring finger domain | 35 | 78 | 8.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 17 | 83 | 1.77E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 86 | 1.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 36 | 77 | 8.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 78 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 155 | - | - |
| Coils | Coil | Coil | 121 | 141 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021723735.1 | putative RING-H2 finger protein ATL12 [Chenopodium quinoa] | 0 |
| Q9SL78 | Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9RH08 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_067600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology