Basic Information
Locus ID:
evm.TU.LG23.1049
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 32394698 | 32403504 | - | evm.TU.LG23.1049 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 91,531.53 Da | 42.31 | 68.74 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00207 | fer2 | 58 | 134 | 7.59086E-25 | IPR001041 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 386 | 532 | 7.6E-55 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 576 | 802 | 1.5E-72 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 274 | 331 | 1.1E-15 | IPR033443 |
| Pfam | PF00111 | 2Fe-2S iron-sulfur cluster binding domain | 62 | 133 | 2.3E-16 | IPR001041 |
| SUPERFAMILY | SSF54292 | 2Fe-2S ferredoxin-like | 54 | 145 | 2.49E-24 | IPR036010 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 385 | 805 | 3.6E-194 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 592 | 768 | 3.6E-194 | - |
| Gene3D | G3DSA:3.10.20.30 | - | 53 | 146 | 5.6E-25 | IPR012675 |
| TIGRFAM | TIGR02008 | fdx_plant: ferredoxin [2Fe-2S] | 55 | 137 | 7.9E-33 | IPR010241 |
| ProSiteProfiles | PS51085 | 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. | 56 | 147 | 11.489741 | IPR001041 |
| ProSitePatterns | PS00197 | 2Fe-2S ferredoxin-type iron-sulfur binding region signature. | 92 | 100 | - | IPR006058 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 368 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021741499.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Chenopodium quinoa] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AEA4 | ribonuclease P (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology