Basic Information
Locus ID:
evm.TU.LG22.92
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 769073 | 770803 | - | evm.TU.LG22.92 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 64,754.62 Da | 45.12 | 101.67 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 36 | 373 | 2.62E-26 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 45 | 3.27E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 321 | 539 | 8.63E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 4 | 241 | 4.1E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 251 | 380 | 7.8E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 381 | 545 | 2.9E-19 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 177 | 202 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 332 | 357 | 9.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 203 | 228 | 55.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 306 | 331 | 710.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 511 | 537 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 485 | 510 | 0.0026 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 90 | 115 | 120.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010691043.1 | F-box/LRR-repeat protein 14 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QEN5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 19 | gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g160670, BVRB_9g218820, BVRB_9g218830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24776, Sbi_jg8641 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19963 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56011, Sgl60655, Sgl61204 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... |
| Amaranthaceae | Chenopodium quinoa | 16 | CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... |
| Apiaceae | Apium graveolens | 1 | Ag4G00092 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G24598 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018340m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g068330.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.792 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.57916.3, evm.TU.57917.3 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6695 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12271, nbisL1-mrna-12272 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17128 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20704 |
| Salicaceae | Populus euphratica | 1 | populus_peu34905 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI003651800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013683 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19304_chr07_+, STRG.19306_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2295, TC08G2298 |