Basic Information
Locus ID:
evm.TU.LG22.870
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 10890175 | 10891995 | + | evm.TU.LG22.870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 44,622.11 Da | 46.06 | 77.02 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 233 | 0.0045 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 11 | 81 | 5.4E-21 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 276 | 0.0079 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 320 | 9.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 376 | 0.0031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 95 | 381 | 1.37E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 391 | 3.9E-127 | IPR015943 |
| SMART | SM00320 | WD40_4 | 193 | 233 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 276 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 320 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 377 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 184 | 5.5E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 187 | 9.230148 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 193 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 242 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 378 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 236 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 321 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 321 | 11.154684 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 171 | 185 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 307 | 321 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 364 | 378 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 307 | 321 | 1.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_034681172.1 | WD-40 repeat-containing protein MSI2 [Vitis riparia] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834GXN3 | CAF1C_H4-bd domain-containing protein OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim05G0057000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology