Basic Information
Locus ID:
evm.TU.LG22.65
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 573682 | 580439 | + | evm.TU.LG22.65 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 24,245.97 Da | 52.40 | 52.63 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 22 | 134 | 4.1E-21 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 139 | 187 | 2.6E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 193 | 1.46E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 201 | 8.6E-21 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 131 | 6.8E-31 | IPR043151 |
| SMART | SM00439 | BAH_4 | 21 | 135 | 2.3E-42 | IPR001025 |
| SMART | SM00249 | PHD_3 | 139 | 186 | 2.4E-8 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 135 | 23.852692 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 137 | 188 | 9.1073 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 140 | 185 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 213 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39100.1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. Putative transcription factor containing a PHD finger and BAH motif, required for normal development | 0 |
| RefSeq | XP_015892494.1 | chromatin remodeling protein SHL isoform X2 [Ziziphus jujuba var. spinosa] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZC29 | Chromatin remodeling protein SHL-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology