Basic Information
Locus ID:
evm.TU.LG22.424
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 4127673 | 4131878 | + | evm.TU.LG22.424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 71,934.65 Da | 51.83 | 64.38 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 375 | 504 | 1.1719E-64 | - |
| CDD | cd00201 | WW | 20 | 50 | 8.95721E-5 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 387 | 495 | 4.9E-34 | IPR001650 |
| Pfam | PF00397 | WW domain | 19 | 49 | 2.1E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 180 | 350 | 6.6E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 52 | 1.57E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 228 | 509 | 9.88E-76 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 13 | 58 | 1.5E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 133 | 363 | 3.2E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 364 | 536 | 1.8E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 415 | 495 | 2.9E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 18 | 51 | 4.9E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 175 | 378 | 4.6E-65 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 390 | 534 | 26.238853 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 156 | 184 | 10.704907 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 187 | 361 | 30.760799 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 17 | 51 | 11.152 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 307 | 315 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 23 | 49 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_010694508.1 | ATP-dependent RNA helicase-like protein DB10 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9AIL9 | RNA helicase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology