Basic Information
Locus ID:
evm.TU.LG22.421
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 4093138 | 4094448 | - | evm.TU.LG22.421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 49,934.00 Da | 47.47 | 84.45 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 27 | 63 | 2.9E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 25 | 88 | 1.96E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 23 | 69 | 1.2E-9 | - |
| SMART | SM00256 | fbox_2 | 32 | 72 | 5.0E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 26 | 71 | 11.352077 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30920.1 | F-box family protein. | 0 |
| RefSeq | XP_018716061.2 | F-box protein At3g07870 [Eucalyptus grandis] | 0 |
| P0C2G2 | Putative F-box protein At1g30920 OS=Arabidopsis thaliana OX=3702 GN=At1g30920 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7C9EQL5 | Yellow-k OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1496, gene_23374 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015300, COCNU_07G015310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8264 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1529, evm.TU.LG22.421 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.534, evm.TU.Scaffold_5_RagTag.1577 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12069, nbisL1-mrna-12143, nbisL1-mrna-12163 ... |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.160 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15516, nbisL1-mrna-23528 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132600105, gene-LOC132602587, gene-LOC132614123 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000612100, SOLCI004908700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107003485, gene-LOC107004245, gene-LOC107004251 |