Basic Information
Locus ID:
evm.TU.LG22.380
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 3696845 | 3702094 | + | evm.TU.LG22.380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 92,677.03 Da | 67.58 | 63.04 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 769 | 809 | 2.25887E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 767 | 814 | 5.9E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 769 | 815 | 4.79E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 751 | 820 | 3.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 770 | 809 | 10.704165 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 82 | - | - |
| Coils | Coil | Coil | 94 | 114 | - | - |
| Coils | Coil | Coil | 700 | 720 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659180.1 | uncharacterized protein LOC110649078 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A7C9ASD0 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology