Basic Information
Locus ID:
evm.TU.LG22.364
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 3490560 | 3497752 | + | evm.TU.LG22.364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 48,720.63 Da | 37.61 | 112.08 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 22 | 416 | 1.33518E-55 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 242 | 431 | 5.9E-9 | IPR011701 |
| Pfam | PF07690 | Major Facilitator Superfamily | 57 | 206 | 1.1E-12 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 57 | 427 | 5.49E-36 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 18 | 422 | 8.0E-34 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 16 | 426 | 9.888723 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 302 | 323 | 8.1E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 87 | 111 | 8.1E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 362 | 385 | 8.1E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 75 | 8.1E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021718248.1 | hippocampus abundant transcript-like protein 1 [Chenopodium quinoa] | 0 |
| P51563 | Tetracycline resistance protein, class G OS=Vibrio anguillarum OX=55601 GN=tetA PE=3 SV=1 | 0 | |
| TrEMBL | A0A7C8YLQ5 | MFS domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology