Basic Information
Locus ID:
evm.TU.LG22.295
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 2620160 | 2621311 | + | evm.TU.LG22.295 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 41,669.94 Da | 74.30 | 56.81 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 232 | 273 | 7.41865E-25 | - |
| Pfam | PF13639 | Ring finger domain | 231 | 273 | 2.3E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 38 | 2.2E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 212 | 279 | 4.64E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 277 | 2.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 232 | 272 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 232 | 273 | 12.326995 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 366 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_021772245.1 | probable E3 ubiquitin-protein ligase RHC1A [Chenopodium quinoa] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8YZ47 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology