Basic Information
Locus ID:
evm.TU.LG22.1277
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 21832858 | 21842339 | + | evm.TU.LG22.1277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 33,355.82 Da | 49.04 | 85.54 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 191 | 0.022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 261 | 1.83E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 261 | 4.1E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 109 | 149 | 0.0083 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 193 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 263 | 120.0 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_028770867.1 | autophagy-related protein 18a-like [Prosopis alba] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CT94 | Autophagy-related protein 18a-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology