Basic Information
Locus ID:
evm.TU.LG22.1255
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 20932739 | 20939015 | + | evm.TU.LG22.1255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 91,984.28 Da | 56.95 | 54.40 | -1.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 369 | 397 | 7.1E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 403 | 430 | 4.9E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 364 | 398 | 1.02E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 399 | 3.3E-15 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 400 | 431 | 3.8E-8 | - |
| SMART | SM00547 | zf_4 | 404 | 428 | 1.0E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 371 | 395 | 2.6E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 369 | 398 | 10.138906 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 402 | 431 | 9.314576 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 373 | 392 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 406 | 425 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 801 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R1A6 | RanBP2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology