Basic Information
Locus ID:
evm.TU.LG22.1186
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 17821080 | 17826562 | - | evm.TU.LG22.1186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 70,793.51 Da | 51.11 | 76.40 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 423 | 556 | 1.21692E-66 | - |
| CDD | cd17920 | DEXHc_RecQ | 225 | 422 | 9.10004E-96 | - |
| Pfam | PF16124 | RecQ zinc-binding | 559 | 629 | 1.5E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 439 | 546 | 3.2E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 233 | 402 | 7.5E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 270 | 567 | 5.52E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 192 | 422 | 6.3E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 423 | 631 | 3.4E-61 | IPR027417 |
| SMART | SM00490 | helicmild6 | 465 | 547 | 3.1E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 227 | 431 | 4.8E-27 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 225 | 630 | 1.2E-153 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 437 | 588 | 19.178066 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 239 | 415 | 20.279703 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 185 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021860966.1 | ATP-dependent DNA helicase Q-like 1 [Spinacia oleracea] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology