halophFGD

Basic Information

Locus ID: evm.TU.LG21.853

Species & Taxonomic ID: Portulaca oleracea & 46147

Genome Assembly: GWHCBIU00000000

Description: Clathrin assembly protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr21	14837236	14840289	-	evm.TU.LG21.853

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.92	18,100.43 Da	55.05	90.49	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07651	ANTH domain	2	66	1.2E-17	IPR011417
SUPERFAMILY	SSF89009	GAT-like domain	3	66	1.49E-17	-
Gene3D	G3DSA:1.20.58.150	ANTH domain	1	68	3.2E-15	IPR014712

Gene Ontology

Biological Process:

GO:0048268 (clathrin coat assembly)

Molecular Function:

Cellular Component:

GO:0030136 (clathrin-coated vesicle)

KEGG Pathway

KO Term:

K20043 (clathrin coat assembly protein AP180)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G01600.1	ENTH/ANTH/VHS superfamily protein.
RefSeq	XP_021733123.1	putative clathrin assembly protein At2g01600 [Chenopodium quinoa]
Swiss-Prot	Q8LBH2	Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana OX=3702 GN=At2g01600 PE=2 SV=2
TrEMBL	A0A803LJM5	ENTH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Beta vulgaris	1	BVRB_5g105470
Portulacaceae	Portulaca oleracea	2	evm.TU.LG21.853, evm.TU.LG26.828
Posidoniaceae	Posidonia oceanica	12	gene.Posoc01g21050, gene.Posoc01g36390, gene.Posoc04g12350 ... gene.Posoc04g12400, gene.Posoc04g12410, gene.Posoc04g12460, gene.Posoc04g12500, gene.Posoc07g07740, gene.Posoc07g09530, gene.Posoc07g09580, gene.Posoc07g09630, gene.Posoc07g15130
Rhizophoraceae	Kandelia obovata	1	Maker00000459