Basic Information
Locus ID:
evm.TU.LG21.536
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 7332104 | 7335229 | + | evm.TU.LG21.536 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 32,621.11 Da | 51.83 | 90.38 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 7 | 45 | 2.9E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 45 | 164 | 7.26E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 52 | 1.07E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 44 | 1.2E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 154 | 6.2E-12 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 10.689717 | IPR001810 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 208 | 219 | - | IPR017900 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01620.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_021727260.1 | F-box protein SKIP28-like [Chenopodium quinoa] | 0 |
| Q9ZU90 | F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LJL7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology