Basic Information
Locus ID:
evm.TU.LG21.441
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 5692907 | 5697027 | - | evm.TU.LG21.441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 75,659.16 Da | 46.78 | 78.86 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 210 | 4.85232E-31 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 360 | 1.3E-105 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 88 | 169 | 5.1E-12 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 418 | 5.9E-12 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 421 | 496 | 8.5E-6 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 15 | 208 | 1.07E-49 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 360 | 1.05E-61 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 363 | 491 | 8.83E-32 | IPR011068 |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 358 | 1.2E-158 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 363 | 480 | 3.2E-26 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 1.2E-158 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 4 | 604 | 3.0E-219 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 597 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_024030358.1 | nuclear poly(A) polymerase 1 isoform X1 [Morus notabilis] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A937 | polynucleotide adenylyltransferase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology