Basic Information
Locus ID:
evm.TU.LG21.387
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 4710077 | 4727151 | - | evm.TU.LG21.387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 142,759.09 Da | 48.68 | 76.39 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 309 | 437 | 8.0716E-20 | - |
| CDD | cd12108 | Hr-like | 48 | 174 | 6.58667E-31 | - |
| CDD | cd12108 | Hr-like | 656 | 812 | 2.62406E-29 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1123 | 1166 | 9.37751E-17 | - |
| Pfam | PF14599 | Zinc-ribbon | 1171 | 1218 | 4.1E-15 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 652 | 750 | 7.0E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 307 | 439 | 1.8E-5 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 50 | 176 | 1.0E-11 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1123 | 1165 | 1.4E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 995 | 1070 | 2.2E-17 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1123 | 1169 | 2.24E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 988 | 1051 | 7.45E-8 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1061 | 1116 | 3.4E-15 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1119 | 1168 | 6.1E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 648 | 886 | 2.9E-26 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 309 | 455 | 1.3E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 44 | 194 | 1.2E-34 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1195 | 1221 | 1.3E-7 | - |
| SMART | SM00184 | ring_2 | 1124 | 1165 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1124 | 1166 | 11.176261 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 988 | 1057 | 25.556404 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1060 | 1123 | 29.04855 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology