Basic Information
Locus ID:
evm.TU.LG21.37
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 352023 | 353261 | + | evm.TU.LG21.37 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 48,014.42 Da | 44.59 | 82.31 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 42 | 5.8E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 72 | 2.75E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 39 | 2.0E-7 | - |
| SMART | SM00256 | fbox_2 | 3 | 43 | 4.3E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 43 | 11.90846 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62660.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_028774124.1 | F-box/kelch-repeat protein At3g06240-like [Prosopis alba] | 0 |
| Q9LV12 | Putative F-box protein At5g62660 OS=Arabidopsis thaliana OX=3702 GN=At5g62660 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G723400 |
| Portulacaceae | Portulaca oleracea | 23 | evm.TU.LG03.1144, evm.TU.LG03.179, evm.TU.LG03.180 ... |