Basic Information
Locus ID:
evm.TU.LG21.361
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 4314906 | 4316196 | + | evm.TU.LG21.361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 45,608.95 Da | 41.78 | 74.61 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 204 | 239 | 0.0023 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 22 | 92 | 1.1E-17 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 283 | 0.022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 106 | 381 | 4.43E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 396 | 4.1E-105 | IPR015943 |
| SMART | SM00320 | WD40_4 | 243 | 283 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 239 | 0.005 | IPR001680 |
| SMART | SM00320 | WD40_4 | 150 | 190 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 327 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 0.012 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 157 | 193 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 157 | 199 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 248 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 382 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 242 | 8.623787 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 177 | 191 | - | IPR019775 |
| Coils | Coil | Coil | 10 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BSR0 | CAF1C_H4-bd domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_020436 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG13.663, evm.TU.LG13.669, evm.TU.LG13.671 ... |