Basic Information
Locus ID:
evm.TU.LG21.359
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 4297536 | 4298820 | + | evm.TU.LG21.359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 45,470.75 Da | 36.63 | 76.91 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 379 | 0.0032 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 24 | 91 | 1.3E-17 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 282 | 0.0044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 203 | 238 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 104 | 382 | 9.71E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 393 | 3.4E-107 | IPR015943 |
| SMART | SM00320 | WD40_4 | 198 | 238 | 5.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 380 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 282 | 8.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 326 | 0.76 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 189 | 2.7E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 284 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 347 | 381 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 241 | 9.019239 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 156 | 198 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 156 | 192 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 247 | 10.809215 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 176 | 190 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 176 | 190 | 5.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 367 | 381 | 5.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 269 | 283 | 5.0E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BSR0 | CAF1C_H4-bd domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_020436 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG13.663, evm.TU.LG13.669, evm.TU.LG13.671 ... |