Basic Information
Locus ID:
evm.TU.LG21.357
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 4273184 | 4274483 | + | evm.TU.LG21.357 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 45,833.94 Da | 40.62 | 79.60 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 286 | 0.0099 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 24 | 91 | 2.6E-16 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 384 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 243 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 105 | 387 | 6.23E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 398 | 7.1E-106 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 287 | 9.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 385 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 194 | 7.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 331 | 3.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 252 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 203 | 10.34136 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 181 | 195 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BSR0 | CAF1C_H4-bd domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_020436 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG13.663, evm.TU.LG13.669, evm.TU.LG13.671 ... |