Basic Information
Locus ID:
evm.TU.LG21.350
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 4153534 | 4154361 | - | evm.TU.LG21.350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 31,590.90 Da | 32.99 | 76.44 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 124 | 162 | 0.0039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 69 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 118 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 16 | 262 | 3.36E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 273 | 1.3E-82 | IPR015943 |
| SMART | SM00320 | WD40_4 | 122 | 162 | 5.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 166 | 206 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 78 | 118 | 5.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 29 | 69 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 260 | 0.035 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 85 | 121 | 9.019239 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 36 | 72 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 36 | 78 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 85 | 127 | 10.909469 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 56 | 70 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 247 | 261 | 4.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 56 | 70 | 4.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 149 | 163 | 4.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1QGU2 | CAF1C_H4-bd domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_05G082100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG13.663, evm.TU.LG13.669, evm.TU.LG13.671 ... |