Basic Information
Locus ID:
evm.TU.LG21.344
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 4038263 | 4048152 | - | evm.TU.LG21.344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 40,637.19 Da | 56.39 | 79.77 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.69417E-32 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 146 | 195 | 1.12269E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 342 | 377 | 4.2E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 6.4E-20 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 155 | 190 | 8.7E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 261 | 316 | 1.0E-22 | IPR015360 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 2.87E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 149 | 200 | 6.18E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 323 | 384 | 5.59E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 259 | 324 | 1.44E-22 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 8.6E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 334 | 381 | 7.0E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 250 | 317 | 1.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 145 | 195 | 6.3E-21 | - |
| SMART | SM00727 | CBM | 259 | 302 | 6.5E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 152 | 192 | 0.0011 | IPR015940 |
| SMART | SM00165 | uba_6 | 342 | 379 | 1.7E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.0E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 385 | 5.5E-120 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 339 | 380 | 14.546953 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 150 | 193 | 12.33002 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.956364 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 287 | 309 | 7.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 336 | 352 | 7.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 368 | 383 | 7.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 367 | 7.9E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 115 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021299612.1 | ubiquitin receptor RAD23c-like [Herrania umbratica] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9CX93 | Ubiquitin receptor RAD23 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology