Basic Information
Locus ID:
evm.TU.LG21.30
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 310422 | 316196 | - | evm.TU.LG21.30 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 80,678.91 Da | 44.66 | 76.65 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16350 | VOC_like | 98 | 370 | 6.23919E-111 | - |
| Pfam | PF07063 | Domain of unknown function (DUF1338) | 96 | 370 | 5.1E-74 | IPR009770 |
| Pfam | PF00646 | F-box domain | 405 | 446 | 4.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 404 | 449 | 9.16E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 402 | 457 | 3.4E-6 | - |
| Gene3D | G3DSA:3.10.180.50 | - | 97 | 348 | 3.2E-82 | - |
| SMART | SM01150 | DUF1338_2 | 97 | 381 | 1.8E-81 | IPR009770 |
| SMART | SM00256 | fbox_2 | 405 | 445 | 1.5E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 399 | 448 | 9.444481 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07040.1 | 0 | |
| RefSeq | XP_010683261.2 | uncharacterized protein LOC104897978 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LMJ7 | 2-oxoadipate dioxygenase/decarboxylase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07040 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RUP8 | DUF1338 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G723400 |
| Portulacaceae | Portulaca oleracea | 23 | evm.TU.LG03.1144, evm.TU.LG03.179, evm.TU.LG03.180 ... |