Basic Information
Locus ID:
evm.TU.LG21.29
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 303687 | 304430 | - | evm.TU.LG21.29 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 27,860.18 Da | 39.31 | 84.78 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 44 | 8.1E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 49 | 6.93E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 55 | 1.1E-6 | - |
| SMART | SM00256 | fbox_2 | 3 | 43 | 5.4E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 43 | 11.140122 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_050135723.1 | F-box/kelch-repeat protein At3g06240-like isoform X3 [Malus sylvestris] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G723400 |
| Portulacaceae | Portulaca oleracea | 23 | evm.TU.LG03.1144, evm.TU.LG03.179, evm.TU.LG03.180 ... |