Basic Information
Locus ID:
evm.TU.LG21.289
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 3148699 | 3149683 | + | evm.TU.LG21.289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 17,307.46 Da | 31.15 | 86.41 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 85 | 146 | 2.44925E-19 | IPR002048 |
| CDD | cd00051 | EFh | 9 | 71 | 5.15775E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 84 | 146 | 1.3E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 8 | 69 | 1.8E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 5 | 146 | 8.28E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 149 | 2.8E-44 | - |
| SMART | SM00054 | efh_1 | 9 | 37 | 0.05 | IPR002048 |
| SMART | SM00054 | efh_1 | 45 | 73 | 0.29 | IPR002048 |
| SMART | SM00054 | efh_1 | 85 | 113 | 1.2E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 121 | 149 | 3.3E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 41 | 76 | 10.691735 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 117 | 152 | 13.788124 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 5 | 40 | 13.453381 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 81 | 116 | 14.680779 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 130 | 142 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 54 | 66 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 94 | 106 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 18 | 30 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021846565.1 | probable calcium-binding protein CML15 [Spinacia oleracea] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QEY9 | Calcium-binding protein CML16 OS=Spinacia oleracea OX=3562 GN=SOVF_186650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology