Basic Information
Locus ID:
evm.TU.LG20.758
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 8594376 | 8601009 | - | evm.TU.LG20.758 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 70,776.85 Da | 39.37 | 89.54 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 504 | 642 | 2.11804E-56 | IPR000608 |
| Pfam | PF07983 | X8 domain | 335 | 406 | 7.8E-18 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 27 | 176 | 5.4E-26 | IPR000490 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 505 | 640 | 1.2E-38 | IPR000608 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 185 | 322 | 1.1E-25 | IPR000490 |
| SUPERFAMILY | SSF54495 | UBC-like | 488 | 646 | 2.82E-54 | IPR016135 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 27 | 321 | 8.59E-57 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 330 | 426 | 4.5E-8 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 482 | 643 | 1.6E-54 | IPR016135 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 26 | 182 | 2.0E-44 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 183 | 328 | 3.6E-36 | - |
| SMART | SM00212 | ubc_7 | 504 | 647 | 8.6E-61 | - |
| SMART | SM00768 | X8_cls | 334 | 419 | 1.1E-42 | IPR012946 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 501 | 647 | 49.286217 | IPR000608 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_016472663.1 | PREDICTED: glucan endo-1,3-beta-glucosidase 4-like [Nicotiana tabacum] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5C2K3 | UBC core domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001329 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology