Basic Information
Locus ID:
evm.TU.LG20.740
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 8321664 | 8330511 | + | evm.TU.LG20.740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 97,876.21 Da | 38.08 | 76.70 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 412 | 468 | 1.25665E-31 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 477 | 835 | 4.3E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 145 | 243 | 3.0E-10 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 413 | 469 | 2.2E-11 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 401 | 469 | 4.2E-15 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 298 | 836 | 5.74E-77 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 631 | 802 | 1.0E-224 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 74 | 239 | 8.0E-48 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 411 | 853 | 1.0E-224 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 283 | 390 | 6.1E-15 | - |
| SMART | SM00298 | chromo_7 | 412 | 471 | 1.1E-12 | IPR000953 |
| SMART | SM00439 | BAH_4 | 135 | 254 | 1.4E-13 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 481 | 833 | 1.0E-31 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 413 | 469 | 14.096001 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 135 | 254 | 16.885468 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 299 | 843 | 44.532078 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 483 | 495 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 572 | 585 | 8.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 300 | 316 | 8.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 526 | 540 | 8.9E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010673524.2 | DNA (cytosine-5)-methyltransferase CMT3 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9R7E9 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_103070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology