Basic Information
Locus ID:
evm.TU.LG20.72
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 674275 | 682847 | + | evm.TU.LG20.72 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 97,195.60 Da | 52.15 | 79.31 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 762 | 798 | 3.8E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 257 | 367 | 2.7E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 738 | 798 | 1.29E-9 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 135 | 394 | 2.34E-20 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 136 | 399 | 1.2E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 738 | 812 | 2.6E-7 | - |
| SMART | SM00358 | DRBM_3 | 735 | 799 | 9.9E-5 | IPR014720 |
| SMART | SM00577 | forpap2 | 201 | 377 | 5.7E-9 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 734 | 800 | 12.62084 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 142 | 393 | 16.44495 | IPR004274 |
| Coils | Coil | Coil | 781 | 801 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021858294.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Spinacia oleracea] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZZN2 | protein-serine/threonine phosphatase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology