Basic Information
Locus ID:
evm.TU.LG20.711
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 7755154 | 7759109 | + | evm.TU.LG20.711 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 67,606.23 Da | 52.41 | 93.99 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 32 | 72 | 1.0E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 92 | 137 | 7.8E-25 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 95 | 559 | 1.99E-36 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 66 | 4.19E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 71 | 601 | 1.9E-178 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 70 | 3.7E-19 | - |
| SMART | SM00256 | fbox_2 | 34 | 75 | 3.8E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 180 | 217 | 470.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 129 | 153 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 505 | 529 | 210.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 396 | 420 | 0.76 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 313 | 337 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 154 | 179 | 100.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 456 | 479 | 290.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 28 | 65 | 8.517177 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021773054.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9E2F0 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology