Basic Information
Locus ID:
evm.TU.LG20.697
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 7580819 | 7594640 | - | evm.TU.LG20.697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 174,521.13 Da | 38.12 | 104.05 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 315 | 603 | 6.03016E-102 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 931 | 1224 | 1.3401E-89 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1248 | 1468 | 2.49086E-122 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 829 | 1.83575E-106 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 316 | 582 | 3.4E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 648 | 781 | 4.8E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 935 | 1177 | 1.8E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1267 | 1415 | 1.6E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 623 | 850 | 1.2E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1240 | 1480 | 4.14E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 931 | 1230 | 1.06E-48 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 310 | 611 | 7.72E-36 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 612 | 1.2E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 623 | 856 | 9.4E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1233 | 1485 | 8.5E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 895 | 1231 | 1.8E-52 | IPR036640 |
| SMART | SM00382 | AAA_5 | 656 | 829 | 7.9E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1276 | 1468 | 1.9E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 933 | 1197 | 32.985489 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1250 | 1484 | 17.300388 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 629 | 852 | 21.348654 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 314 | 595 | 33.850624 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 754 | 768 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 899 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1528 | 1547 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021853038.1 | putative ABC transporter C family member 15 [Spinacia oleracea] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B6Z841 | ABC-type xenobiotic transporter OS=Davidia involucrata OX=16924 GN=Din_009833 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology