Basic Information
Locus ID:
evm.TU.LG20.604
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 6116923 | 6124397 | - | evm.TU.LG20.604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 120,798.33 Da | 40.97 | 85.23 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 883 | 916 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 483 | 0.026 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 348 | 921 | 7.38E-42 | IPR011047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 738 | 1065 | 5.49E-29 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 402 | 1.9E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 705 | 931 | 7.6E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 409 | 666 | 6.5E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 932 | 1077 | 6.5E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 1.1E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.6E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 966 | 1008 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 436 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1031 | 1063 | 460.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 0.0068 | IPR001680 |
| SMART | SM00320 | WD40_4 | 877 | 916 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 834 | 874 | 3.9 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.3E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 1.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.559952 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.021325 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 884 | 925 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 343 | 385 | 9.773251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 884 | 919 | 9.783781 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 593 | 624 | 8.804123 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021772817.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIJ6 | Topless-related protein 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_060520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology