Basic Information
Locus ID:
evm.TU.LG20.196
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 1874511 | 1889066 | - | evm.TU.LG20.196 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 98,035.69 Da | 56.25 | 79.50 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 187 | 324 | 4.52059E-34 | - |
| CDD | cd00821 | PH | 22 | 121 | 5.36261E-12 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 618 | 698 | 2.0E-19 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 187 | 331 | 1.7E-31 | IPR000198 |
| Pfam | PF00169 | PH domain | 21 | 125 | 6.6E-13 | IPR001849 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 187 | 379 | 5.89E-33 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 16 | 132 | 2.74E-18 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 12 | 128 | 4.9E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 158 | 380 | 1.3E-41 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 184 | 375 | 1.9E-26 | IPR000198 |
| SMART | SM00233 | PH_update | 20 | 128 | 3.0E-16 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 19 | 126 | 15.5261 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 178 | 378 | 30.416302 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 439 | - | - |
| Coils | Coil | Coil | 667 | 701 | - | - |
| Coils | Coil | Coil | 608 | 649 | - | - |
| Coils | Coil | Coil | 808 | 835 | - | - |
| Coils | Coil | Coil | 207 | 234 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_021734234.1 | rho GTPase-activating protein 7-like [Chenopodium quinoa] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S053 | Rho GTPase-activating protein 7-like OS=Spinacia oleracea OX=3562 GN=SOVF_009250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology