Basic Information
Locus ID:
evm.TU.LG20.131
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 1255630 | 1257244 | - | evm.TU.LG20.131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 41,066.81 Da | 32.01 | 83.22 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 49 | 8.0E-9 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 106 | 273 | 4.45E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 71 | 8.76E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 59 | 2.4E-8 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 6.4E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 49 | 11.617022 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_022851444.1 | F-box/kelch-repeat protein At3g06240-like [Olea europaea var. sylvestris] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7N0UTT1 | F-box domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |