Basic Information
Locus ID:
evm.TU.LG20.1176
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 19953987 | 19955988 | - | evm.TU.LG20.1176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 22,724.81 Da | 62.13 | 79.80 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 80 | 126 | 1.1E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 23 | 61 | 1.2E-18 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 55 | 1.44E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 100 | 194 | 4.91E-11 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 59 | 5.3E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 60 | 199 | 4.9E-46 | IPR032675 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010686279.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9ARE6 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | contig69197041G000010 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0057 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0065 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4813 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00013444, Pov_00013446, Pov_00013447, Pov_00013448 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7847 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG20.1176 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15999 |