Basic Information
Locus ID:
evm.TU.LG20.1161
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 19459107 | 19465622 | + | evm.TU.LG20.1161 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 154,671.31 Da | 56.23 | 64.66 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 224 | 257 | 5.3E-14 | IPR014977 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1213 | 1312 | 7.4E-9 | IPR003347 |
| Pfam | PF08879 | WRC | 108 | 145 | 3.2E-10 | IPR014977 |
| Pfam | PF08879 | WRC | 403 | 441 | 1.7E-16 | IPR014977 |
| Pfam | PF08879 | WRC | 9 | 50 | 1.4E-14 | IPR014977 |
| Pfam | PF08879 | WRC | 162 | 201 | 2.5E-9 | IPR014977 |
| Pfam | PF08879 | WRC | 289 | 329 | 5.1E-7 | IPR014977 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 904 | 1342 | 5.77E-19 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 886 | 1338 | 5.6E-95 | - |
| SMART | SM00558 | cupin_9 | 1002 | 1329 | 2.3E-35 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 8 | 53 | 19.685621 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 223 | 267 | 17.46821 | IPR014977 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 590 | 635 | 8.771522 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 106 | 150 | 16.10247 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 401 | 445 | 20.544964 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 161 | 208 | 17.145958 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 288 | 332 | 12.864592 | IPR014977 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1021 | 1329 | 18.34643 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1155 | 1176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 288 | - | - |
| Coils | Coil | Coil | 351 | 398 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21430.1 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase. | 0 |
| RefSeq | XP_021719519.1 | uncharacterized protein LOC110687212 isoform X1 [Chenopodium quinoa] | 0 |
| Q8H1S7 | Lysine-specific demethylase JMJ28 OS=Arabidopsis thaliana OX=3702 GN=JMJ28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RDU2 | WRC domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_078740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology