Basic Information
Locus ID:
evm.TU.LG19.925
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 31634713 | 31639791 | + | evm.TU.LG19.925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 94,776.40 Da | 47.38 | 81.79 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 43 | 199 | 2.66564E-45 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 777 | 818 | 1.48301E-24 | - |
| Pfam | PF00069 | Protein kinase domain | 491 | 743 | 1.9E-42 | IPR000719 |
| Pfam | PF04564 | U-box domain | 773 | 842 | 1.9E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 773 | 841 | 4.15E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 462 | 745 | 1.75E-69 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 54 | 173 | 2.43E-7 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 36 | 188 | 1.3E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 471 | 558 | 1.2E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 773 | 843 | 4.3E-29 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 559 | 759 | 1.6E-48 | - |
| SMART | SM00220 | serkin_6 | 486 | 756 | 9.9E-38 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 776 | 839 | 1.4E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 772 | 843 | 35.030739 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 486 | 756 | 36.286938 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 492 | 513 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 604 | 616 | - | IPR008271 |
| Coils | Coil | Coil | 367 | 450 | - | - |
| Coils | Coil | Coil | 308 | 335 | - | - |
| Coils | Coil | Coil | 339 | 359 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010670307.2 | U-box domain-containing protein 33 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M2X4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology