Basic Information
Locus ID:
evm.TU.LG19.914
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 31437327 | 31440267 | + | evm.TU.LG19.914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.17 | 23,616.06 Da | 45.20 | 89.63 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 145 | 205 | 2.02312E-7 | - |
| Pfam | PF12678 | RING-H2 zinc finger domain | 144 | 205 | 6.2E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 210 | 1.33E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 213 | 1.2E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 145 | 204 | 5.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 145 | 205 | 11.736875 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047079935.1 | RING-H2 finger protein ATL56-like [Lolium rigidum] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5891 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.914 |