Basic Information
Locus ID:
evm.TU.LG19.844
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 30349190 | 30353324 | - | evm.TU.LG19.844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 70,292.58 Da | 38.23 | 97.79 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 9.81086E-29 | - |
| Pfam | PF04564 | U-box domain | 257 | 327 | 1.5E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 550 | 589 | 3.7E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 7.4E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 468 | 506 | 3.7E-7 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 333 | 9.19E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 635 | 1.93E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 338 | 430 | 1.5E-17 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 117 | 1.2E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 431 | 534 | 5.3E-22 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 4.8E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 535 | 645 | 4.7E-16 | IPR011989 |
| SMART | SM00185 | arm_5 | 425 | 466 | 38.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 384 | 424 | 5.2E-7 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 4.9E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 549 | 589 | 11.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 467 | 507 | 0.32 | IPR000225 |
| SMART | SM00185 | arm_5 | 508 | 548 | 35.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | 8.8024 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 46.583221 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 13.5274 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 437 | 479 | 8.6974 | IPR000225 |
| Coils | Coil | Coil | 622 | 642 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_010685786.2 | U-box domain-containing protein 13 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A5S8 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology