Basic Information
Locus ID:
evm.TU.LG19.497
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 21936819 | 21943836 | - | evm.TU.LG19.497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 43,024.47 Da | 28.88 | 83.61 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 162 | 239 | 1.6E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 89 | 353 | 4.49E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 51 | 361 | 9.1E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 274 | 313 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 127 | 380.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 223 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 355 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 182 | 0.88 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 55 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021735541.1 | SEC12-like protein 2 [Chenopodium quinoa] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A7C9EVD3 | ANAPC4_WD40 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology