Basic Information
Locus ID:
evm.TU.LG19.20
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 916989 | 918935 | - | evm.TU.LG19.20 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 46,806.06 Da | 44.31 | 92.49 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 253 | 383 | 2.52369E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 44 | 242 | 1.72387E-136 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 65 | 226 | 9.5E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 266 | 374 | 7.0E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | 1.99E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 249 | 413 | 4.7E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 248 | 5.3E-68 | IPR027417 |
| SMART | SM00487 | ultradead3 | 59 | 256 | 8.8E-58 | IPR014001 |
| SMART | SM00490 | helicmild6 | 293 | 374 | 2.9E-31 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | 25.795689 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 40 | 68 | 10.433057 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | 29.880562 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_018835118.1 | eukaryotic initiation factor 4A-15 [Juglans regia] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZH22 | RNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology