Basic Information
Locus ID:
evm.TU.LG19.1276
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 35703034 | 35706728 | - | evm.TU.LG19.1276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 41,635.05 Da | 48.96 | 76.15 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 329 | 371 | 8.99704E-16 | - |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 146 | 232 | 2.5E-8 | IPR032872 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 28 | 97 | 2.6E-15 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 328 | 371 | 3.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 373 | 1.62E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 375 | 5.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 329 | 370 | 1.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 329 | 371 | 12.120453 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021846500.1 | putative RING-H2 finger protein ATL21A [Spinacia oleracea] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QGR3 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology