Basic Information
Locus ID:
evm.TU.LG19.1121
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 33981101 | 33982390 | + | evm.TU.LG19.1121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 46,875.66 Da | 45.86 | 105.69 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 16 | 59 | 1.37858E-23 | - |
| Pfam | PF04564 | U-box domain | 12 | 89 | 3.8E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 195 | 405 | 3.53E-14 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 89 | 2.91E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 96 | 1.9E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 117 | 407 | 1.2E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 15 | 85 | 6.4E-25 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 293 | 336 | 8.8724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 11 | 92 | 31.050173 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021857852.1 | E3 ubiquitin-protein ligase PUB23-like [Spinacia oleracea] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXM4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology