Basic Information
Locus ID:
evm.TU.LG19.1114
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 33820819 | 33827876 | + | evm.TU.LG19.1114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 78,903.38 Da | 35.53 | 87.22 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 261 | 372 | 7.1E-7 | IPR006527 |
| Pfam | PF07734 | F-box associated | 495 | 583 | 6.4E-7 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 124 | 4.06E-6 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 161 | 384 | 9.4E-23 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 411 | 587 | 3.2E-17 | IPR017451 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 690 | - | - |
| Coils | Coil | Coil | 661 | 690 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021721030.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7G4H1 | F-box domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_026772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_19844, gene_19846, gene_19848, gene_5734 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003462 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl72718, Sgl76257, Sgl76258 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000038235 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1114, evm.TU.LG24.1115 |