Basic Information
Locus ID:
evm.TU.LG19.104
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 4333138 | 4339739 | - | evm.TU.LG19.104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 47,256.54 Da | 51.70 | 65.58 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 63 | 133 | 4.30525E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 147 | 221 | 3.03912E-49 | - |
| CDD | cd12354 | RRM3_TIA1_like | 267 | 342 | 2.89789E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 63 | 129 | 4.9E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 218 | 1.1E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 269 | 326 | 2.2E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 259 | 350 | 3.53E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 59 | 224 | 1.42E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 141 | 238 | 1.3E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 244 | 346 | 1.8E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 140 | 2.3E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 62 | 131 | 1.8E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 268 | 338 | 4.0E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 147 | 220 | 7.5E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 267 | 342 | 14.931036 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 61 | 135 | 14.982202 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 224 | 17.284681 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 264 | - | - |
| Coils | Coil | Coil | 3 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_010685278.1 | oligouridylate-binding protein 1B [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DU33 | Oligouridylate binding protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology